SNP Profiles of AMAZ 12   View Data

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 Key

 1234567891011121314
_Input profile
ACCCAGAAAAAGGGCCAAGGAGAAAGAC
1._RUQ_334b
______GG_______
2._RUQ_334
______GG_______
3._AMAZ_12
_____CTGG_AA_____
4._RUQ_334
_____CTGG_AA_____
5._RUQ_334
_____CT_GG__AG___
6._GC-05-158-4-11
ACACAGACCTTTAGGGATCTGG_TTGG
7._GC-05-158-4-11
ACACAGACCTTTAGGGATCTGGTTTTGG
8._GC-05-158-4-11
ACACAGACCTTTAGGGATCTGGTTTTGG
9._GC-05-158-4-11
ACACAGACCTTTAGGGATCTGGTTTTGG
10._GC-05-158-4-11
ACACAGACCTTTAGGGATCTGGTTTTGG
11._GC-05-010-1-10
ACACAGACCTTTAGGGATCTGGTTTTGG
12._GC-05-010-1-10
ACACAGACCTTTAGGGATCTGGTTTTGG
13._GC-05-010-1-10
ACACAGACCTTTAGGGATCTGGTTTTGG
14._GC-05-010-1-10
ACACAGACCTTTAGGGATCTGGTTTTGG
15._GC-05-010-1-10
ACACAGACCTTTAGGGATCTGGTTTTGG
16._AMAZ_12
_____TTAG_AT_____
17._AMAZ_12
_____TTAG_AT_____
18._AMAZ_12
_____TTAG_AT_____
19._AMAZ_12
_____TTAG_AT_____
20._AMAZ_12
_____TTAG_AT_____
21._AMAZ_12
_____TTAG_AT_____
22._AMAZ_12
_____TTAG_AT_____
23._AMAZ_12
_____TTAG_AT_____
24._AMAZ_12
_____TTAG_AT_____
25._AMAZ_12
_____TTAG_AT_____
 1516171819202122232425262728
_Input profile
AGAAAAAGACGGAGAGACAACCAAACGG
1._RUQ_334b
_TT______AC_GG___
2._RUQ_334
_TT______AC_GG___
3._AMAZ_12
_TTTT_AC_CT_ACTTGGAATTCC
4._RUQ_334
_TTTT_AC_CT_ACTTGGAGGTCC
5._RUQ_334
_TT_CT___CTACTTGGAAGTCC
6._GC-05-158-4-11
CTGTCTTT_GGCTCT_CCCGAAGTCT
7._GC-05-158-4-11
CTGTCTTT_GGCTCTCCCCCGAAGTCT
8._GC-05-158-4-11
CTGTCTTTCCGGCTCTCCCCCGAAGT_
9._GC-05-158-4-11
CTGTCTTT_GGCTCTCCCCCGAAGTCT
10._GC-05-158-4-11
CTGTCTTT_GGCTCTCCCCCGAAGTCT
11._GC-05-010-1-10
CTGTCTTT_GGCTCTCCCCCGAAGTCT
12._GC-05-010-1-10
CTGTCTTT_GGCTCTCCCCCGAAGTCT
13._GC-05-010-1-10
CTGTCTTT_GGCTCTCCCCCGAAGTCT
14._GC-05-010-1-10
CTGTCTTT_GGCTCTCCCCCGAAGTCT
15._GC-05-010-1-10
CTGTCTTT_GGCTCTCCCCCGAAGTCT
16._AMAZ_12
_GTCT_CC_CT_CCCCCGAAGT_
17._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
18._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
19._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
20._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
21._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
22._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
23._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
24._AMAZ_12
_GTCT___CT_CCCCCGAAGTCT
25._AMAZ_12
_GTCT___CT__CCCGAAGTCT
 2930313233343536373839404142
_Input profile
GGAAGGACCGGGGGGGGGCCTTATGGGG
1._RUQ_334b
_____GG______GG_
2._RUQ_334
_____GG______GG_
3._AMAZ_12
CC__ACCGGG_CCGG__AT__
4._RUQ_334
CC__ACCGGG_CCGG__AT__
5._RUQ_334
__GGACCGGG_CC____GGGG
6._GC-05-158-4-11
CCATGG_CGAAGGCTGG_ATAAAGGG
7._GC-05-158-4-11
CCATGGAACGAAGGCTGGGGATAAAGGG
8._GC-05-158-4-11
CCATGGAACGAAGGCTGGGGATAAAGGG
9._GC-05-158-4-11
CCATGGAACGAAGGCTGGGGATAAAGGG
10._GC-05-158-4-11
CCATGGAACGAAGGCTGGGGATAAAGGG
11._GC-05-010-1-10
CCATGGAACGAAGGCTGGGGATAAAGGG
12._GC-05-010-1-10
CCATGGAACGAAGGCTGGGGATAAAGGG
13._GC-05-010-1-10
CCATGGAACGAAGGCTGGGGATAAAGGG
14._GC-05-010-1-10
CCATGGAACGAAGGCTGGGGATAAAGGG
15._GC-05-010-1-10
CCATGG_CGAAGGCTGGGGATAAAGGG
16._AMAZ_12
CC__AACGAA_CTGG__AA__
17._AMAZ_12
CC__AACGAA_CTGG__AA__
18._AMAZ_12
CC__AACGAA_CTGG__AA__
19._AMAZ_12
CC__AACGAA_CTGG__AA__
20._AMAZ_12
CC__AACGAA_CTGG__AA__
21._AMAZ_12
CC__AACGAA_CTGG__AA__
22._AMAZ_12
CC__AACGAA_CTGG__AA__
23._AMAZ_12
CC__AACGAA_CTGG__AA__
24._AMAZ_12
CC___CGAA_CTGG__AA__
25._AMAZ_12
CC___CGAA_CTGG__AA__
 4344454647484950515253545556
_Input profile
ATAGGGGGGGATGGAAAACCAAACGGCG
1._RUQ_334b
_________CC___GG
2._RUQ_334
_________AC___GG
3._AMAZ_12
AT___GG____CC_GT_GG
4._RUQ_334
AT___AG____CC_GT_GG
5._RUQ_334
AT_____CC__CC_GT_CG
6._GC-05-158-4-11
ATCCAAAGGGAAGG_CCACAGGTAGCC
7._GC-05-158-4-11
ATCCAAAGGGAAGG_CCACAGGTAGCC
8._GC-05-158-4-11
ATCCAAAGGGAAGG_CCACAGGTAGCC
9._GC-05-158-4-11
ATCCAAAGGGAAGG_CCACAGGTAGCC
10._GC-05-158-4-11
ATCCAAAGGGAAGG_CCACAGGTAGCC
11._GC-05-010-1-10
ATCCAAAGGGAAGG_CCACAGGTAGCC
12._GC-05-010-1-10
ATCCAAAGGGAAGG_CCACAGGTAGCC
13._GC-05-010-1-10
ATCCAAAGGGAAGG_CCACAGGTAGCC
14._GC-05-010-1-10
ATCCAAAGGGAAGG_CCACAGGTAGCC
15._GC-05-010-1-10
ATCCAAAGGGAAGG_CCACAGGTAGCC
16._AMAZ_12
AT___GG____AC_GT_CC
17._AMAZ_12
AT___GG____AC_GT_CC
18._AMAZ_12
AT___GG____AC_GT_CC
19._AMAZ_12
AT___GG____AC_GT_CC
20._AMAZ_12
AT___GG____AC_GT_CC
21._AMAZ_12
AT___GG____AC_GT_CC
22._AMAZ_12
AT___GG____AC_GT_CC
23._AMAZ_12
AT___GG____AC_GT_CC
24._AMAZ_12
AT___GG____AC_GT_CC
25._AMAZ_12
AT___GG____AC_GT_CC
 5758596061626364656667686970
_Input profile
AAGGAGAGAAAACCAGAGAAAAAACCCG
1._RUQ_334b
AA_CT___GGAG____CCCT
2._RUQ_334
AA_TT___GGAG____ACTT
3._AMAZ_12
AA__CT__GG_______
4._RUQ_334
AA__CT__GG_______
5._RUQ_334
AA_CTCT__GGAGCT__TTCC_
6._GC-05-158-4-11
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
7._GC-05-158-4-11
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
8._GC-05-158-4-11
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
9._GC-05-158-4-11
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
10._GC-05-158-4-11
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
11._GC-05-010-1-10
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
12._GC-05-010-1-10
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
13._GC-05-010-1-10
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
14._GC-05-010-1-10
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
15._GC-05-010-1-10
ACCCCCCTAAAAGTAGTTGTGGTTCCCG
16._AMAZ_12
AC__CT__GT_______
17._AMAZ_12
AC__CT__GT_______
18._AMAZ_12
AC__CT__GT_______
19._AMAZ_12
AC__CT__GT_______
20._AMAZ_12
AC__CT__GT_______
21._AMAZ_12
AC__CT__GT_______
22._AMAZ_12
AC__CT__GT_______
23._AMAZ_12
AC__CT__GT_______
24._AMAZ_12
AC__CT__GT_______
25._AMAZ_12
AC__CT__GT_______
 717273747576777879808182  
_Input profile
GGCGAGGGGGCCAAGGGGATAGAGX_XX_X
1._RUQ_334b
_CG__GG______AGX_XX_X
2._RUQ_334
_GG__GG______AGX_XX_X
3._AMAZ_12
_CGCT___TTGG_ATCTAGX_XX_X
4._RUQ_334
_CGCT___TTGG_ATCTAGX_XX_X
5._RUQ_334
_CGTT_-CC_____AGX_XX_X
6._GC-05-158-4-11
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
7._GC-05-158-4-11
AAGGCTCCAGCCTTGGCCATCTAGX_XX_X
8._GC-05-158-4-11
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
9._GC-05-158-4-11
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
10._GC-05-158-4-11
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
11._GC-05-010-1-10
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
12._GC-05-010-1-10
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
13._GC-05-010-1-10
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
14._GC-05-010-1-10
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
15._GC-05-010-1-10
AAGGCTCCAGCCTTGGCCATCTAAX_XX_X
16._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
17._AMAZ_12
_GGCT___TTGG_ATCTAGX_XX_X
18._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
19._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
20._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
21._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
22._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
23._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
24._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X
25._AMAZ_12
_GGCT___TTGG_ATCTAAX_XX_X

Input profile: AMAZ_12 RUQ_334

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._AMAZ_12 RUQ_334b

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._AMAZ_12 RUQ_334

58.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._AMAZ_12

52.9 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B94 T2
 Dapeng Zhang, 2016

4._AMAZ_12 RUQ_334

50 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._AMAZ_12 RUQ_334

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._AMAZ_12 GC-05-158-4-11

39.5 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._AMAZ_12 GC-05-158-4-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._AMAZ_12 GC-05-158-4-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

9._AMAZ_12 GC-05-158-4-11

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._AMAZ_12 GC-05-158-4-11

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._AMAZ_12 GC-05-010-1-10

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._AMAZ_12 GC-05-010-1-10

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._AMAZ_12 GC-05-010-1-10

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._AMAZ_12 GC-05-010-1-10

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

15._AMAZ_12 GC-05-010-1-10

38.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._AMAZ_12

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 2 > FP
 Dapeng Zhang, 2016

17._AMAZ_12

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 4
 Dapeng Zhang, 2016

18._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 1 > FP
 Dapeng Zhang, 2016

19._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 3
 Dapeng Zhang, 2016

20._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 5
 Dapeng Zhang, 2016

21._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 2 > FP
 Dapeng Zhang, 2016

22._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 4 > FP
 Dapeng Zhang, 2016

23._AMAZ_12

36.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 3
 Dapeng Zhang, 2016

24._AMAZ_12

36.4 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

25._AMAZ_12

35.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998